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Natural Prodcast Episode 10: A Primer on Genome Mining
… Genome Institute is under the DOE’s mission of energy and environment. And so we know that lots of different types of … of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial Genomics. It’s one of …
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IMG 4 version of the integrated microbial genomes comparative analysis system
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IMG: the integrated microbial genomes database and comparative analysis system
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IMG ER: a system for microbial genome annotation expert review and curation
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Finding the Fermenters
… use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. …
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Natural Prodcast Episode 23: Aaron Puri
… onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that … unless there’s enough of them around to affect their environment. So I think the classical example yeah, is biofilm … that an organism might want to use to affect its environment. I think that you could imagine if you have two …
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Natural Prodcast Episode 2: The Primer, Part 2
… there. And then, you know, they will have to create an environment that’s good for them to grow in. They might have … different stages of growth or different signals from the environment might cause you to start producing things. Yeah.  … exploration of is the use of secondary metabolism in the environment, and, sort of, understanding – like we’ve talked …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome Stability … within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform … and metabolic roles across global metagenomes (within IMG).  The Impact The initial analysis highlights abundances …
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Natural Prodcast Episode 1: The Primer, Part 1
… the world bring us big problems related to energy and the environment – problems that might need special technology for … natural products are to understanding the natural environment, and so our Director, Nigel Mouncey, started and … but my experience of how microbes are interacting in the environment like, like my journey into exploring that world, I …
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