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Natural Prodcast Episode 20: Brian Bachmann
It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a year, a full gene cluster would come out. And it was a very exciting … this guy at a company called Ecopia was talking about a gene cluster a week. They completed a gene cluster per week. …
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Natural Prodcast Episode 14: Nigel Mouncey
… my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … spheroides . And that got me really interested in microbial gene regulation and some pathways. And I thought I’d take an … got me back a little bit to redox enzymes and looking at gene regulation. And then from there, I went to Dow …
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Microbial Program
… energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Products
… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into … clone 102/NA DNA Synthesis Constructs 5-10kb in size Single gene or multiple small genes assembled totaling 5-10kb in …
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PSimScan: Algorithm and Utility for Fast Protein Similarity Search
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DNA Synthesis Program
Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … in advancing functional genomics, focusing on developing genetic systems that can address global energy and …
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JGI Portals
… host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database … annotation, taxonomic classification, and microbial host predictions.  … The Mycocosm web portal provides data … available sequenced algal genomes and genome annotations generated by the JGI and by others. The web portal allows …
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HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
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CSP Functional Genomics
… and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and track record of the applicant.  Learn about the general review process or find details on the internal … processing. … Review Process … Sample Requirements … For general questions, please reach out to Christa Pennacchio, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … want to explain that to someone who doesn’t know much about genetics or anything else, science wise maybe, what genome … form is not an easy task at all. So you can make all the predictions in the world that you want, but until you have …
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Computationally Classifying Fungal Lifestyles
… were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 … the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle based on 6 gene clusters showed a …
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