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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … the process. If you have any questions, please contact your Project Manager or jgi-project[email protected] . … 1) … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community …
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to request the capabilities and expertise of … an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform … information into biological function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable …
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Natural Prodcast Episode 11: Marnix Medema
Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from … Dan Udwary: Very helpful, yes. And in that same sort of leapfrogging of data generation to data storage, now– well, …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact …
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