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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri U. et al. … Harrington LB, et al (2018) Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science …
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Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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Publication Policy
JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users … contributions of collaborators and users. For example if, by agreement with the collaborator, JGI staff take a lead … to maximize the impact of user research. The crucial elements are  proposal Award DOI(s), JGI’s ROR ID number, …
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Natural Prodcast Episode 8: Eric Schmidt
… hard it was – it felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to … be related to each other, even though they had common elements. And so we really needed to get together. You know, … snails, fungi, and bacteria. In recent years, Eric has been exploring natural products made by animals, which is highly …
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Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
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Secondary Metabolites Program
… underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are … works to uncover these hidden biochemical resources by exploring the genetic pathways responsible for their … towards secondary metabolite synthesis. We are currently exploring  Escherichia coli and  Streptomyces lysate …
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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … protection of certain types of data to support their use by those generating data. The JGI Data Policy applies to … outside repositories (e.g. the Inventory of Composable Elements (ICE) repository and/or DNASU Plasmid Repository) …
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Sequencing Submission Requirements for DNA Synthesis
… files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include SnapGene . … …
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Natural Prodcast Episode 10: A Primer on Genome Mining
I know that it’s looking in the genome for genetic elements of interest, you know, something like treasure. DAN … can just mediate so many kinds of interactions. And by understanding them, we can promote the health and … basically, all of the known things that were out there and created some good rule sets and put it all together in one …
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Special Initiatives & Programs
… negotiation with the JGI.  Investigators with grants funded by DOE-BER requiring support from the JGI may  submit … center is studying a range of plants and, in addition to exploring plant fiber breakdown, aims to increase plant … for game-changing breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. …
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