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Metagenome Program
… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … environmental sustainability, and many other applications. By understanding how microbes contribute to ecosystem … microbial activity measurements, such as quantitative stable isotope probing (qSIP)-metagenomics and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … returns on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast windows into … to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis …
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Mission
… program, plays a central role in advancing this frontier by supporting the scientific foundations that drive … innovation. The JGI contributes to this mission by enabling large-scale genomic discoveries, data …
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Special Initiatives & Programs
… negotiation with the JGI.  Investigators with grants funded by DOE-BER requiring support from the JGI may  submit … initiative that seeks to reduce U.S. gasoline consumption by 20% within 10 years through increased efficiency and diversification of … are seeking to build upon their line of scientific inquiry by leveraging JGI experimental, computational and personnel …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Natural Prodcast Episode 13: Francisco Barona Goméz
… usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, … content produced by microbes the result of millions of years of evolution. And if we could actually link terms to … a symbiont, for example, of an ant. So these are very stable interactions that have been evolving for 300 million …
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Natural Prodcast Episode 22: Alison Narayan
… the best in E coli? Which ones are the most thermally stable? And those are important to us before we ask those … pitfalls of that not working out well. JACKIE WINTER: The tears. DAN UDWARY: Yeah, for sure. JACKIE WINTER: I mean. … in depth. So some of these that were initially identified by Russell Cox, like [INAUDIBLE]– DAN UDWARY: Explain to my …
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Mapping Heat Resistance in Yeasts
… environment. Summary There are more than 1,000 species of yeasts and they vary in terms of genetics, metabolism and … Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of … between species that have been separated for millions of years. The study highlights the genes that could be used to …
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Natural Prodcast Episode 6: Marc Chevrette
… more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s presentation from the 2019 JGI … at the Broad Institute in Cambridge, Mass. for a couple years before joining Warp Drive. And what kind of pushed me … conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And they’re really excited about …
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John Vogel
… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … regulation, abiotic stress tolerance, and the mechanisms by which plants interact with their microbiomes. In … et. al. 2020 Gradual polyploid genome evolution revealed by a pan-genomic analysis of Brachypodium hybridum and its …
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Partnerships: Adopt-A-Genome
… of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or published.  The … analysis. IMG/M user interface is designed for use by microbiologists to quickly bridge the gap from sequence …
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CSP Large Scale Call
… merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of the … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is … CSP Large Scale call, a Letter of Intent (LOI) is required by the due date printed below. Proposals will be invited …
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