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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first … is active? … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to …
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… small genes assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a …
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Natural Prodcast Episode 9: Roger Linington
… program, which stands for International Cooperative Biodiversity Groups, and it’s this great program funded by the … of biodiversity, of which natural products chemistry is one. DAN: So, I’ve always known Roger as an expert in … carefully at these as being candidates siderophores. Or for cell-cell signaling or for, you know, other other roles …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … it took 15 to 18 years before we were able to convince the diversity of marine ecologists that they needed to consider … time, we found another molecule. This time it was from a fungal strain collected from sediments in the ocean. No, …
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Natural Prodcast Episode 4: Nancy Keller
… episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … which seem to be history.   I should mention that this is one of several interviews you’ll hear which we recorded at … parasite you really can’t grow well. You have to have it in cell culture. So we are going to see if we can express that …
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Natural Prodcast Episode 18: A CSP Primer
… to explaining what a CSP is, how you apply for and get one, and what happens once you do. Before we start, I … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … proposals that are really multifaceted, that do request a diversity of the different capabilities that we have, that …
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Microbiome Data Science Team
… in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), … types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from …
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Metagenome Program
… elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … processes. This research provides insights into microbial diversity and metabolic potential, with implications for … such as carbon cycling, nutrient cycling, and energy flow. One of the key goals of the Program is to develop a deeper …
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Natural Prodcast Episode 1: The Primer, Part 1
… great conversations that we’ve already recorded with some excellent scientists, and that’s probably how we’ll continue … on, let me know! All right, so here we go. This is episode one of the Natural Prodcast Primer!  — DAN: Hey, Alison.  … where this happened have a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps …
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New Lineages of Life Group
… use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature … with an expanded complement of translation system components. Science, 356 (6333), 82-85 Schulz et al. (2016) A …
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CSP Large Scale Call
… emphasis that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All …
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Natural Prodcast Episode 16: Marcy Balunas
Am fine. I live in a pandemic so I’m no different than anyone else.  DAN: Yeah. I mean fine in pandemic adjusted terms … postdoc Panama as part of the international cooperative biodiversity group (ICBG) based in Panama and was dual there … what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are …
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