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Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae
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Environmental Genomics Group
… into DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies … across environmental microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., …
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Single Cell Research Group
… Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … blob – sort of overexposed – but this this white blob is a fungus called Penicillium . Now called Penicillium . And so … saved millions of lives since then. So, Penicillium is a fungus. But as people sort of started exploring these kinds …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … from polar and non-polar oceans.   The reasons behind C-fern’s size and complexity revealed : C-fern is typical of most ferns in many ways, including its …
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The fungus that made itself at home
… and bioproducts. This study lends insights on how the fungus has responded to manmade changes in its ecological … were harvested for constructing buildings, the dry rot fungus migrated indoors and across borders, adapting to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo …
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Natural Prodcast Episode 7: Ben Shen
… right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … to different species.  DAN: Yeah, yeah.  BEN: And then for fungus, even more. And of the fungus, we have more than 2600 different species. But you …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by … and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials including …
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Natural Prodcast Episode 22: Alison Narayan
… has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our product, and one of those oxygen atoms from O2 ends up as a molecule of water. DAN UDWARY: Mhm. So … Chemistry”,  ACS AU.  2023.   doi: 10.1021/jacsau.3c00263 “Deciphering the evolution of flavin-dependent monooxygenase …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … by the OGG initiative — for Ceratopteris richardii, or C-fern — came out in the September issue of Nature Plants . C-fern has a genome approximately three times the size of the …
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Natural Prodcast Episode 19: Bill Fenical
… seems hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, … is a very horrible genus. Because first of all, it’s not a fungus, so why would you have m-y-c-e-s as a suffix? But … also about this second drug that’s in development from a fungus. BILL FENICAL: Yeah. This drug is called plinabulan. …
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Soil metabolomics: Deciphering underground metabolic webs in terrestrial ecosystems
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