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JGI Portals
… to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … of life, in a uniquely integrated context. IMG/M provides tools for analyzing the functional capability of microbial … portal provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables …
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Marine Microbe Contains Multitudes
… were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … BBTools is a suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.  … BBTools …
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Industry Engagement Program
… data repositories for genome information with analysis tools for mining and prediction The JGI works in partnership …
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Data Ecosystem
… advancements enabled by artificial intelligence and other tools. By bringing users together through our systems, we … Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and the development of new informatics tools specifically optimized for high-performance computing …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Natural Prodcast Episode 9: Roger Linington
… we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … – it’s really a bit of a mess. And many of the system wide tools that people would like to build would greatly benefit … basal training set we could use to build more sophisticated tools, because now we had a very reasonably large set of …
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Natural Prodcast Episode 11: Marnix Medema
… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … cluster identification was now a solved problem and so my tools were not needed. It all worked out in the end because later I brought all those tools to Warp Drive and we used them for a while before they …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional …
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Analyze Data
… to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global …
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DAS Tool for Genome Reconstruction from Metagenomes
… from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness … binning methods also extends to harnessing future binning tools. DAS Tool is an example of how JGI users can benefit from the ETOP program, as tools such as this can help advance genome-centric analyses. …
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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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