Search

… The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose …

… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data access, visualization, and analysis tools for …

… The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …

… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at …

… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … health. By integrating cutting-edge technologies and data-driven methods, the program equips researchers …

… published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … and JGI together aim to publish the first analysis of data produced at the facility, provided this is done in a …

… Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the … Metagenome Stability Diagram in IMG/M Data portal …

… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …

… interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays … to the development and maintenance of a number of viromics tools and resources. The main focus of these resource … phage proteins user-friendly integrated pipelines (MVP) and databases (IMG/VR) for viromics analyses …

… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly … sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a …

… Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its … and contributing this information freely to the public databases. In 2004, the JGI established itself as a national …