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… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of … algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … PhycoCosm Data Portal …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … to extract insights from large-scale biological datasets: Our group develops and applies artificial … learning approaches to analyze large-scale biological datasets. This work helps uncover patterns and relationships …

… support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … of cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene clusters …

… The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose …

… The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …

… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …

… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … lot in the past. This sort of idea of, “there’s a lot of data out there: let’s put it together”. So you have – at …

… published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … and JGI together aim to publish the first analysis of data produced at the facility, provided this is done in a …

… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … health. By integrating cutting-edge technologies and data-driven methods, the program equips researchers …

… Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the … Metagenome Stability Diagram in IMG/M Data portal …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics … Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and …