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… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …

… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up …

…   The Joint Genome Institute's DNA Synthesis Platform capabilities … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … to extract insights from large-scale biological datasets: Our group develops and applies artificial …

… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and …

… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …

… to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … is no cost to the user and no granting of funds. All JGI data is made publicly available in accordance with the JGI’s Data Policy . In cases where the JGI provides customized …

… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … solution for production of high-quality fungal reference genomes, this program is an important initiative that …