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… program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using … & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and distribution of prokaryotic …

… The CSP and FICUS calls are open to both domestic and … Agreement must be signed before work can begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New Investigator call, investigators may have existing …

… the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and …

… https://doi.org/10.1038/s41396-020-00870-1 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria … https://doi.org/10.1038/s41564-019-0510-x Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome …

… linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: Yeah, that’s kind of … with, and, turns out, that high repeat sequence area encoded a polyketide synthase, with many modules of high … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …

… episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … that you are the first person we’ve had on to talk about fungal natural products. I can say that I started in fungal natural products – I did my Ph.D. with Craig Townsend …

… Leveraging massive comparative genomics to decode millions of mystery genes and … fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at …

… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … ‘omics methods. Here we were able to capture both plant and fungal expression patterns in root cross-sections. … 10.1073/pnas.1907500116 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 …

… of a gene that you knew was probably biosynthetic that encoded for some secondary metabolism, then you would … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… program in the DOE’s Office of Science. In December 2019, the JGI relocated to the Integrative Genomics Building …

… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie … to thrive in drought conditions. The proposal targets the CSP focus area in plant microbiomes, as well as those in …