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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … are also used for micro-eukaryotes, in particular to study inter-organismal interactions. Novel approaches are …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  Successful … but proof of concept for the demonstration of a technology that would be applicable to DOE mission is …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … of DNA sequencing data, coupled with recent computational technology advances in management, processing and … The research efforts of the group have concentrated in demonstrating the power of data science in …
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … like, and then you could characterize it. The classical study that demonstrated this is Challis et al, Chemistry and … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes …
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … group to work on sequencing, synthesis and genome mining technology to help access complicated natural product gene … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, … who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … challenge our understanding of viral complexity and evolution Our research focuses on discovering and characterizing …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … hold me accountable and yell at me if I slip again. My JGI coworkers are way too nice to yell at me, so that’s gonna be … just now switching from intermicrobial interactions, studying intermicrobial interactions by imaging interactions …
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Natural Prodcast Episode 11: Marnix Medema
… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural … what was this bacterium, and why did your group want to study it? Marnix Medema: You mean the PhD project that I … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …
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