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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … of DNA sequencing data, coupled with recent computational technology advances in management, processing and … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … but proof of concept for the demonstration of a technology that would be applicable to DOE mission is …   Biological Small-Angle Neutron Scattering (Bio-SANS) instrument available at Oak Ridge National Laboratory  Center …
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … group to work on sequencing, synthesis and genome mining technology to help access complicated natural product gene … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … like, and then you could characterize it. The classical study that demonstrated this is Challis et al, Chemistry and … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … hold me accountable and yell at me if I slip again. My JGI coworkers are way too nice to yell at me, so that’s gonna be … just now switching from intermicrobial interactions, studying intermicrobial interactions by imaging interactions …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … kept looking for open jobs that said, we want a chemist to study the ocean. And I didn’t find a single job … to do something completely new. And that is to begin to study the organic chemistry of life in the sea. And he …
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Natural Prodcast Episode 11: Marnix Medema
… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural … what was this bacterium, and why did your group want to study it? Marnix Medema: You mean the PhD project that I … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …
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