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… scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

… By integrating cutting-edge technologies and data-driven methods, the program equips researchers worldwide to tackle … using deep-coverage RNA-seq analyzed in a consistant computational framework. It enables cross-species … research to achieve genotype-independent, automated methods, and delivering scalable transformation services …

… that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot … the batch effect. Because they use different extraction methods and stuff like that. So we have a lot of data out …

… developments in microbial genomics, metagenomics, and computational biology, and to empower them with the … 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other … no dedicated compute infrastructure is required to perform computational analysis. IMG/M user interface is designed for …

… enabling ever-higher levels of throughput. We also develop methods for efficient QA/QC based on next-generation … group: The applications group is focus on developing methods for converting digital information from sequence …

… (hours)**   Actual Total   Actual % Goal   FY 2023 Total   600.0 716.929 119% 8,585 8,664 101% Q1 2023 150.0 170.477 … hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, … or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. …

… or dedicated compute infrastructure is required to perform computational analyses. The Mycocosm user interface is … easily adapted by instructors training their students in computational biology and microbiology topics.  Learn more …

… for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples …

… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … genomes from soil metagenomes compared to other methods. The Impact Understanding how individual microbes … cycling to plant health and growth. Developing a scalable computational approach that provides researchers with the …

… preferences A 10″ Simple Rules” article on increasing computational skills among biologists JGI CSP Proposal: …

… cutting-edge approaches for and with users, and create computational tools and resources for them. Their concerted …