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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. The … Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference …
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Institutional User Agreements
… indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … to assume responsibility for all material transfers. *University of California Campus : An Appendix for the …
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Natural Prodcast Episode 18: A CSP Primer
… is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user … project, can you talk a little bit about the data release policy? TANJA WOYKE: Yeah, absolutely. So we do have … related to human health or creating vaccines, human gut microbiomes. We don’t do things related to human health. In …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue University. She’s in the Department of Chemistry … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … what molecule might bind them and then allow for their release from the DNA and transcription of biosynthetic gene …
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Mission
…     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All the … the completion of DOE’s commitment to the Human Genome Project , the University of California, which manages … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated …
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Microbial Program
… with isolate collections to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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Publication Policy
… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of the project, and authorship is expected to include all those …
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Natural Prodcast Episode 5: Brad Moore
… in his science. And he was working with some really cool projects at that time. So I was pretty stoked to be able to … right from the beginning, I always wanted to be true to my roots, and always work with marine systems because that’s … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, …
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Natural Prodcast Episode 22: Alison Narayan
… we have our conversation with Professor Alison Narayan, from the University of Michigan. I hope she’ll accept this … enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … candy corn, which is perfect timing for an October podcast release. I hope that doesn’t get me canceled.The monthly …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for … the process. If you have any questions, please contact your Project Manager or jgi-project[email protected] . … 1) … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage …
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FICUS
… an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … will provide access to its biorepository at Arizona State University, which contains representative samples of the …
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IMG Group
… them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and … datasets, as long as they agree with the IMG/M data release policy and follow the metadata requirements for …
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