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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … such efforts should specify the collaborative nature of the project, and authorship is expected to include all those …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … the professor was actually quite enthusiastic about the project and he arranged funding to do it nonetheless from …
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Plant-Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled experimental and …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people behind … to a more sustainable world. Learn about JGI-supported projects, delving into the researchers’ motivations, the …
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Metabolomics Program
Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … and Gene Integration … Metabolomics Program in Detail … Projects and Initiatives … Metabolomics Program Head … …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … choice Glycerol stock of sequence verified clone depends on project DNA Synthesis Combinatorial libraries Multiple genes … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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User Support
The JGI Project Management Office carries out a number of activities … collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as … to DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … classroom modules Testimonials: … A primary purpose of this project is to bring educators from a broad range of …
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