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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … evolution of  Dothideomycetes could provide more insights into how these fungi have adapted to stress and host …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … roots are akin to the ground floor lobby. People walking into the lobby have many reasons for being there, but …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… … DAN: All right. Welcome back to Natural Prodcast. I did it. … but-- [LAUGHS] I feel like a lot of people hedge their way into natural products by starting out in synthesis and then … outreach program JGI Release on DAP-Seq: Enlarging Windows into Understanding Gene Functions Purdue's page on …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint … operations and scientific relevance and quality. … The Fungal & Algal Advisory Committee is chartered to offer … Committee … DNA Synthesis Science User Advisory Committee … Fungal & Algal Program User Advisory Committee … Informatics …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species …
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Igor Grigoriev
DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Commun …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … with a ribosome. Then, some other enzymes chop the protein into smaller pieces, and other enzymes might make other kids …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our … genomes. Fungal plant, algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del … Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) … In general, data …
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Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
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Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass
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