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… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s …

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …

JGI Mission As a U.S. Department of Energy Office of Science … provides advanced genomic capabilities, large-scale data and professional expertise to support the global … and contributing this information freely to the public databases. In 2004, the JGI established itself as a national …

The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the …

… of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … others: indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication …

… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to … advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA …

… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the …

SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a …

… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon … when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …

… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the …

… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ … The Project Overview report includes project-level metadata such as the project name, current status, NCBI & JGI …