Search

… and biogeochemistry. This research helps translate their genomic potential into practical applications, including … program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program provides high-quality, large-scale genomic data to advance microbial research that drives … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to users.  … …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

The central mission of the JGI’s Genomic Technologies department is   ensuring … through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

Below is a brief description of the process needed to prepare and ship samples for … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …