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Products
… in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will …
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Sequencing Technologies & Products
… which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … science to my mom. So I always try to, when we do these definitions, try to keep the simplest possible thing to …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … required to contact the proposal PI and receive permission for their planned work.   …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …
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Natural Prodcast Episode 12: Nadine Ziemert
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … having the same protocols– I think, still looking into standards– how do you say, standardization? DAN UDWARY: …
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Natural Prodcast Episode 11: Marnix Medema
… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … it will check it and see whether the quantity is up to standard, and maybe it gives you some feedback as a …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … the Contracts Officer will notify all that work may begin. Standard practice requires completion of work on all …
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