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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … drives sustainable solutions in energy, agriculture and ecosystem management. … The Microbial Program focuses on … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … the environment. These advances have led to groundbreaking discoveries in diversity and novel functions identified in …

… in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and … and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are designated DOE …

… sources and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … on Phytozome … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the …

… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of …

… to focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of …

… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …

… “BiG” branded family I think. Marnix Medema: Yeah. It’s an ecosystem of software right? Dan Udwary: For sure. Yeah. … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …

Microbes drive critical ecosystem functions and affect global nutrient cycling, … constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …