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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing …  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User …
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DNA Synthesis Science User Advisory Committee
The DNA Synthesis Science User Advisory Committee is chartered … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external advisory panels and advocates of Program strategy, operations, and scientific relevance …
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Prokaryote Program User Advisory Committee
The Prokaryote Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to … on the effective management and strategic objectives of the Program. The Committee serves as the Program's key …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … and improved.  Semi-manual. Assembly, annotation ( IMG ), methylation analysis 131/176 Microbial Single Particle Sort …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … Studying how these compounds are biosynthesized and their roles in the environment, can unlock new avenues for … Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to identify, …
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics … Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … wise maybe, what genome mining is, then, is looking at DNA sequence and trying to find the things that you want to … understanding those broader environmental and ecological roles for secondary metabolites is what our mission is. …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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