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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … developments in microbial genomics, metagenomics, and computational biology, and to empower them with the … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …

… changes. With advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …

… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … include developing innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …

… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … and their evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …

… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … the project was a mixture, initially, of experimental and computational work. And that it involves some of these crazy …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better understand the … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …

… behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … using deep-coverage RNA-seq analyzed in a consistant computational framework. It enables cross-species … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… microbial communities. This involves both experimental and computational exploration of uncultivated viral diversity, … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …