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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … materials for your publication. … Proposal DOIs can be found at the top of the proposal info page on the JGI Genome …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in the …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …

… in Tubingen in southern Germany were working on a very similar project like six months after I started. Another PhD … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes …

… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to …

… long. Well, when we went looking for a photo of John, we found one from the 70s in the Scripps library, and in it … with the ribosomal peptide natural products, the idea is similar. They’re small peptides made on the ribosome, and … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … selected by the cyanobacteria. And I think something very similar could be happening with methanotrophs. The other … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … diversity, leading to a better understanding of microbial communities and ecosystem function.  The Environmental … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance … is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … more customized analysis, the JGI also participates in publication of results. See more details on our Review …