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With collaborative user projects, the JGI’s Plant Program delves into … in plants and will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

As an Integrative Genome Science User Facility, the JGI … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … analyses of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

The Plant Program Advisory Committee is chartered to offer advice, guidance … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

Microbes drive critical ecosystem functions and affect global nutrient cycling, … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … comes to our existing libraries. Some of the limitations of platforms like GNPS, it’s very poor in terms of annotations …

Metabolomics strengthens -omics technologies at the JGI by … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse …

Data produced and released by the US Department of Energy … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA …