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Publication Policy
… The purpose of this policy is to establish communication norms around … research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … We then investigate the coding potential to find novel functions that may impact microbiome structure and … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … provided by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …
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Publications
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … in bacteria, has been enormous. There are now hundreds of thousands of genomes that are publicly available. So this … and figuring out which gene clusters are responsible for phenotypes that are caused by microbiomes. And what are the …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …
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Mutant phenotypes for thousands of bacterial genes of unknown function
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of …
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