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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … , and use the contributor list provided by JGI to determine the authorship list. The intent of the JGI-provided …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … cycling, plant-microbe interactions, and environmental responses. The program employs advanced mass …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … a field with very real and truly amazing science with a long history, and that’s what we’re going to be talking … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better …
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Plant Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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Publications
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New Lineages of Life Group
… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …
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Natural Prodcast Episode 14: Nigel Mouncey
… 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from here I can get … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with …
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Plant Program
… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working …
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