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… strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … credit those individuals as authors on the publication for their contributions. Authorship arrangements should reflect …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … ultimate objective of facilitating omics-based scientific investigations. Development and maintenance of the … and archaeal genomes. By clustering genomes based on their pairwise AF and ANI values, we were able to ascertain …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … into the coding potential of candidate phyla  to decipher their possible roles in the environment, establish … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … functional assay lets us move beyond cataloging the genes of microorganisms and start making quantitative … specific uncultivated microbes for sequencing based on their level of metabolic activity (BONCAT+FACS). To provide …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … small peptide. So at a certain point, a couple of different groups noticed that they could take all of these adenylation …