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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … of publications and allowing connections between all systems to maximize the impact of user research. The crucial …

… will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on Phytozome … clade-specific novelties and expansions.  … Brachypodium distachyon is an annual grass researchers use as a model for … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … I think this is really– I personally like this really as a model for a collaboration. You have your code as open source … especially across species that might be a little bit more genetically distant where the BGCs may have drifted but they …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed …

… phage function in this tripartite plant-bacterial-phage model system. We seek to expand beyond this model system by … single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… … Information on Software Looking for information on our software, including BBTools ? Click to find …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … metagenomic data with detailed characterization of model systems to explore the dynamics of microbial …

… in studies of complex biological and environmental systems. We optimize our service to the community through … sequencing scores of microbial species as well as several model organisms and contributing this information freely to … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …

… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … of uncultivated lineages is of high value to establish models and hypotheses, experimental data is critical to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

Brachypodium model system traces polyploid genome evolution. Flowering … of the genomes from the diploids  B. stacei and  B. distachyon , a relative of the candidate bioenergy crop … than any individual genome highlighting the fact that the genetic information in a single reference genome is …