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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into … will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on Phytozome … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group … technologies to the broader community.  We focus our efforts on integrating database mining and sequence design …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Publications
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer advice, guidance … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … in microbial genomics, metagenomics, and computational biology, and to empower them with the knowledge and skills …
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Brachypodium: A monocot grass model system for plant biology
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … Berkeley National Laboratory: This center concentrates on “model” crops of rice and Arabidopsis, in the search for …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … sequencing scores of microbial species as well as several model organisms and contributing this information freely to …
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