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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research …

Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … McMahon K. D., Konstantinidis K. T., Eloe-Fadrosh E. A., Kyrpides N. C., Woyke T . Giant virus diversity and host …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so … constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …

… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th …