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Natural Prodcast Episode 11: Marnix Medema
… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … that I was exchanging with people. So I think I wrote 3,000 emails in the course of one and a half year while …
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Environmental Genomics Group
… genomes and other genomic elements (Vyshenska et al. 2023). … microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. et … Mendota. Sci Data 11 , 966 (2024). https://doi.org/10.1038/s41597-024-03826-8 Nayfach, S., Roux, S., Seshadri, R. et …
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Viral Genomics Group
… annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 Coclet, C., Sorensen, P.O., Karaoz, U. et al. (2023) Virus diversity and activity is driven by snowmelt and …
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Partnerships: Adopt-A-Genome
… modules Currently 206 genomes have been selected with 11 published manuscripts published to-date Testimonials: … and publicly available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ … Resour Announc 0:e00891-25. https://doi.org/10.1128/mra.00891-25 . B. Christenson, I. Nouioui, C. Daum, M. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … happening. And so we should have somewhere around 10, 11, 12 million BGCs in the database on the release, and …
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New Lineages of Life Group
… eukaryotes in the open ocean .”  Current Biology , Volume 34 Issue 22. Krinos, A.I., Mars Brisbin, M., Hu, S.K. et al. … conclusions .”  Nature Communications Volume 15 Article 9873. Buscaglia, M. et all (2024) “ Adaptation strategies of …
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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at …
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The unique metabolism of SAR11 aquatic bacteria
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SAR11 bacteria linked to ocean anoxia and nitrogen loss
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Diversity and biogeography of SAR11 bacteria from the Arctic Ocean
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… and materials. The proposal submission deadline is March 31, 2026 .  … (CMMs). Click for a list of CMMs and the results of the 2023 DOE Critical Materials Assessment . While we expect most … increments.  At the JGI, a typical proposal is active for 3 years with the possibility for extension. Fungal genomes, …
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