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The IMG group owns and maintains integral components of JGI’s … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization …

In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …

… metadata such as the project name, current status, NCBI & JGI taxonomy, and data locations on the various JGI … via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …

… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … to help our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there … emeraldBGC along with some other domain analyses like NCBI CD-Search, and InterProScan. And all of those have …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … Dan Udwary: For sure. I mean, that goes all the way back to NCBI, gene annotations and ontologies and things that — … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated …

… embargo .  For each data or analysis product (raw or processed), the embargo starts at completion of standard … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; GNPS2) as described in the  product …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … like. We know what a non-ribosomal peptide or a ribosomally processed peptide looks like. And so we take genes that we … of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial …

… yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … I don’t know. Then I think making sure that the samples are processed in the same way and really comparable, and that … And in the past, we’ve had these monolithic databases, NCBI and IMG , that have a lot of data and really useful …

… which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support   …