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UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … favorite topic in, arguably, my area of expertise, which is genome mining. You’ll hear us talk about what it is, hear me … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …

The Joint Genome Institute's DNA Synthesis Platform capabilities … : a user science group dedicated to user project design, assembly, and quality control Strain Engineering Group : a … workflow management and novel automations for DNA design, assembly and analysis Overview of synthesis products The JGI …

Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … is to develop a deeper understanding of microbial community assembly and microbial interactions, including …

… synthetic biology applications group. The DNA synthesis and assembly group: Our production group operates as user … to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus … We have developed and continue to improve automated assembly pipelines bringing in new technologies, in …

… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … for very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both eukaryotic and …

… data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page …

Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … will be episode 11. This continues our little sprint on genome mining. In the last episode , Alison and I talked … clusters. And then they sequenced a really nice and good assembly. They were able to assemble a really high quality …

… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … boss is Nigel Mouncey, and he’s the director of the Joint Genome Institute. And so anybody who’s listened to other … technologies. Nowadays people are really looking at these assembly line pathways – polyketides – as ways to produce …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to …

… provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …