Search

… this initiative aims to encourage innovative research exploiting a diversity of capabilities. Previously, …

… recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and hopefully we … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature … is your own metabolism. So we came up with this idea of exploiting expansion as an evolutionary signature, telling …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom … environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …

… a couple biology classes in undergrad, but my PhD was an actinobacteria. And I tell all my students this now, but … contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan Udwary: Yeah, this all sounds very … there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … for microbial eukaryotes, build fungal and algal pangenomes, and integrate multi-omics tools to enhance …

November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( Actinomycetota ), a group of bacteria with … activities. Found in marine and terrestrial environments, actinobacteria play roles in both the carbon and nitrogen … Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for …

… that are living there. And we’ve moved recently from actinobacteria now. And we’re focusing much of our efforts …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … so many bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from … then, that we try to find biosynthetic gene clusters in genomes is by homology search. We’re building on the backs …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … take one of those and co-culture them with say one of our Actinobacteria what will happen? Will it create chemistry … thinking about how they are interacting. Is it only with Actinobacteria or is it with our host microbe bacteria as …