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Data produced and released by the US Department of Energy … JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA or GenBank; … multiple projects of different types which can span several years. Projects are defined at proposal acceptance and may …

… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of … for microbiome data science, and the development of new informatics tools specifically optimized for …

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral …

… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … known things that were out there and created some good rule sets and put it all together in one package so that it …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific … and functional genomics data types as well as in advanced assembly and engineering strategies for DNA synthesis … Navigate to the JGI Genome Portal . Click "Advanced Search" next to the search bar. Using the "Search Within" dropdown, …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … that most entries were looked at more at once, and so the quality – the data quality – was reasonably high. And yeah, … there is a high degree of overlap between those two data sets, which we have not yet recognized. So. DAN:  It’s one …

SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … I understand. And they’ve taken all of the really good high-quality genomes and run antiSMASH on those and put them into … databases, which will generate as soon as we have the new sets of data completely populated. And that database will …

The CSP New Investigator Call is for investigators and research … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … delay processing, while samples that are of insufficient quality or quantity will preclude approval for processing. … …

… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … he tells us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a … and good assembly. They were able to assemble a really high quality metagenome of the endosphere microbial communities …