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… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … For example, people do experiments where they involve a population in the lab under a certain stress or conditions, … into our integrated microbial genomes system, which is our comparative analysis system. Once that is completed, the …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

… target is based on 98% of the total available hours.   FY 2018 DOE Metrics There were 1,882 unique* JGI users in FY2018 , which includes Principal Investigators (PIs), Co-PIs, … % of Goal Goal (hours)** Actual Total Actual % Goal FY 2018 Total 200,000 225,299 112.6% 8,584 8,688 101.2% Q1 2018 …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User …

… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature …

… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: Cofounder & CTO, Oralta … … the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … Microbiology.   19 , 407 Berg, M. et al. (2021) Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing …

… program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …

… such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … have enabled reconstruction of complete or near-complete population genomes directly from the environment. These … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …