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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … into our integrated microbial genomes system, which is our comparative analysis system. Once that is completed, the …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …
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CSP Large Scale Call
… For the CSP Large Scale call, a Letter of Intent (LOI) is required …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial …
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DOE Metrics
… target is based on 98% of the total available hours.   FY 2018 DOE Metrics There were 1,882 unique* JGI users in FY2018 , which includes Principal Investigators (PIs), Co-PIs, … Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2018 Total   200,000 225,299 112.6% 8,584 8,688 101.2% Q1 …
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Environmental Genomics Group
… communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . Research Team    … from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial functions in … Genome-resolved metagenomics …
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Single Cell Research Group
… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: Cofounder & CTO, Oralta … the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). Woyke T ., Doud D. F. R., Schulz F. The trajectory of …
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Examples: Successful LOIs & Submissions
… Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with permission from the PIs who … CSP Large Scale Proposal #1 …
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Partnerships: Adopt-A-Genome
… program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …
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User Programs
… the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status …
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Viral Genomics Group
… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question in natural …
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