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… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA synthesis. MIRANDA HARMON-SMITH: …

… The CSP Functional Genomics call is to enable users to perform …

… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… For the CSP Large Scale call, a Letter of Intent (LOI) is required …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, …

… (hours)**   Actual Total   Actual % Goal   FY 2024 Total   650.0 870.574 134% 8,784 8,688 101.2% Q1 2024 162.5 197.381 … target is based on 98% of the total available hours.   FY 2018 DOE Metrics There were 1,882 unique* JGI users in … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with important … new CRISPR-Cas types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of …

… genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … CSP Large Scale Proposal #1 … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional Genomics Submission …

… out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in the earlier primers. In bacteria, at least, and in most fungi, biosynthetic gene clusters, which are the genes that … conducted genome mining on thousands of metagenome-derived genomes. Check out http://naturalprodcast.com for show notes …