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… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard … on genome characteristics, availability of external resources and project goals. Selected genomes will be …

… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … : a user science group dedicated to user project design, assembly, and quality control Strain Engineering Group : a … … gRNA-SeqRET … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology …

… lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They …

… compounds.  The program is working to expand genomic resources for key plant species, enhancing our understanding … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols … for very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both …

… such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific peer … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… synthetic biology applications group. The DNA synthesis and assembly group: Our production group operates as user … to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, …

… protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting material is one of the greatest … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… is to develop a deeper understanding of microbial community assembly and microbial interactions, including … focuses on developing computational tools and visualization resources that support user analysis of … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of … (proposal: INSERT PROPOSAL AWARD DOI(S) HERE) and used resources at the DOE Joint Genome Institute ( …

… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about … … Access to the microbial genomes and associated resources/tutorials is freely available, and any faculty …