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UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The …

… target is based on 98% of the total available hours.   FY 2016 DOE Metrics 1,391 unique* JGI users in FY2016 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Targets Actual* Targets Actual 2007 40 39.22 8400 8609 2006 30 32.74 8400 8734 2005 28 33.63 8400 8760 * Reflects …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of … from the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): 359-367 (2018). … analysis of a microbial consortium. Nature 443, 950-5 (2006). … Research Interests … Former Lab Members … Selected …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI … 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  Metagenomics uncovers gaps in amplicon-based …

… al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et al. (2016) Ecogenomics and potential biogeochemical impacts of …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying …

… (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology … components. Science, 356 (6333), 82-85 Schulz et al. (2016) A Rickettsiales symbiont of amoebae with ancient … in the Gammaproteobacteria. Scientific reports. 5 (1), 1-10 Schulz et al. (2014) Life in an unusual intracellular …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … So they’re in the picomolar range. ALISON: Picomole… is [10 to the] minus twelve, right? BEN: Yeah, yeah. Well, we … collection we have here – all of them were collected before 2016, before that true enforcement of the Nagoya protocol. …

… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … for Marine Science. And then I started my own group in 2016. And it very much ties in all of those experiences, you … goal to have 1,000 women in the program over a span of 10 years. So typically about 80 to 100 women get selected …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And I set that up. And we finally got that to work 10 years later. But in the meantime there, we had people … And I thought, well, I know that we can do this. So in 2006 was when I started our cave-based natural product …