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The Metagenome Program uses advanced sequencing technologies to … that govern ecosystem processes. This research provides insights into microbial diversity and metabolic potential, … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… cycling and inter-organismal interactions. These insights are crucial for addressing key environmental … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  …

… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a …

Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, …

… and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE … the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly lowering … for sequencing. They apply Lean Six Sigma practices to process optimization and development approaches, testing …

… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes …

… “Adopt a Genome” is an informal program for faculty to “claim” the … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … and skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools …

Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with the people … projects, delving into the researchers’ motivations, the insights that amaze them, and how their work contributes to …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …