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Data produced and released by the US Department of Energy … Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to …

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of … the development of tools and infrastructure for microbiome data science, and the development of new informatics tools …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … and JGI together aim to publish the first analysis of data produced at the facility, provided this is done in a …

… target is based on 98% of the total available hours.   FY 2023 DOE Metrics There were 2,373 unique* JGI users in FY2023 , which includes Principal Investigators (PIs), Co-PIs, … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …

… to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, … Xenorhabdus japonica DSM16522 R Robertson, et. al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the …

… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … Chemoenzymatic Tropolone Synthesis”, (preprint)  ChemRxiv.  2023.   doi: 10.26434/chemrxiv-2023-lvngd “Enabling Broader Adoption of Biocatalysis in …

… him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … to everything, but I always thought the conceptual framework was useful, at least. Certainly, I can see many, … often end up realizing that what is defined by the KEGG [database], for example, is not enough even there. So it’s …

SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a … Metabolites Collaboratory SMC Workshop Materials from the 2023 JGI Annual Meeting Using the SMC Website API Endpoints …

FY2023 Spending Profile The JGI is funded primarily by the DOE …