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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …
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Publications
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …
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Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … great guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … gene clusters over time. That we’ll understand all of these situations better, and we can make better predictions. Yeah. …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and genome sequencing of underexplored bacterial and archaeal lineages that are important for bioeconomy …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of … material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … into well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s active, which …
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