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Institutional User Agreements
… of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User … User Agreement and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, … ensure that all contributors to a research project are appropriately recognized and credited for their work, … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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The Escherichia coli MFS-type transporter genes yhjE, ydiM, and yfcJ are required to produce an active bo3 quinol oxidase
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Data Policy
… US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support … to have a limited and time-sensitive protection of certain types of data to support their use by those generating data. … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a broad range of disciplines …
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Natural Prodcast Episode 23: Aaron Puri
… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … it’s more complicated than working with something like E. coli , but it’s doable. And that was a big part of my … And yeah, so the tundripaludum part there comes– the type strain was isolated from Svalbard Norway so right there …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … by bacteria, fungi, algae and plants. These compounds are key to organisms' interactions with their environments …
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Publications
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … is submitted to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the …
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Frequently Asked Questions: Proposal Submission
… Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … on the call link to see specific details including project types supported, sample/capacity limits, and instructions.  …
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