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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell … tools to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Publications
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Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … work performed in its User Facilities, is a legally binding contract.   All User researchers must have their … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Microbiome Data Science Team
The exponential growth of DNA sequencing data, coupled with recent computational technology advances in … Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 16: Marcy Balunas
… you describe what your research is now then and all the cool things you’re doing now?  MARCY: Sure. So my lab has … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … tree without cultivated representatives. The “Great Plate-Count Anomaly” first described by Stanley and Konopa in … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Environmental Genomics Group
… from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of … 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover …
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