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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …
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Soils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs)
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Microbial Program
… vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, … microbial diversity — with an emphasis on bacteria and archaea, and including those associated with … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial …
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Viral Genomics Group
… of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate … population level. To fully characterize the range of virus-host interactions occurring in microbiomes, these omics data …
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New Lineages of Life Group
… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure and … and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …
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Publications
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Microbiome Data Science Team
… of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), … the sequencing and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains … of the functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, …
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Environmental Genomics Group
… thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic … ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . Research Team    … monitoring, bioremediation, and the discovery of novel enzymes and bioactive compounds. …
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Natural Prodcast Episode 23: Aaron Puri
… the future. So, then we were using these probes to look at host pathogen interactions mostly with like enteric … and heterologously express them? Is there like a great host that you could use if you can’t knock genes out? AARON … to identify what’s being made. In some cases it might be novel, in some cases it might be– might be a known structure …
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Natural Prodcast Episode 19: Bill Fenical
… will be monumental as the last episode with Alison as my co-host. We recorded this an awfully long time ago, and she’s … the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we just … now of about 17,000 organisms we’ve isolated from sediments, bottom mud, all over the world. We created ways …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Publications … research experience "light" and... they're getting a publication at the end. " — Professor Matt Escobar,  CSU San …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… but instead it’s two interviews in one. My new co-host, Jackie Winter, has been on a few episodes now, and I … genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew that secondary metabolism is … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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