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Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… all connected. And you can color these nodes. For example, based on taxonomy, or based on class of biosynthetic … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … sometimes correlated or anti correlated, also with other cellular functions in the same and as it was other bacteria …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements provide new … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… types) (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… we want a chemist to study the ocean. And I didn’t find a single job advertisement. But one day, I decided to really … really, all over the world. We used ships. We used land-based marine labs. We wrote cooperative grants with people … that the molecules out there would be toxic to cancer cells. And that started something big. Because at that time, …