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Publication Policy
… to a research project are appropriately recognized and credited for their work, while also adhering to the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … the first analysis of data produced at the facility, provided this is done in a timely fashion. The publications …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … microbial communities to uncover the complex interactions and functions that shape ecosystems. By decoding the …
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Publications
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question that is relevant to DOE missions.  Learn more about this opportunity . …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … which is of fundamental value to improving our understanding of microbial ecology and metabolism by elucidating …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and … viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of the latest …
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … The Plant Program advances our understanding of plants’ biological …
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Institutional User Agreements
… approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for … Non-Proprietary User Agreement and Appendix. An Appendix identifies the type of work or specific proposal to be … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Extreme Scale De Novo Metagenome Assembly
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