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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Publication Policy
… published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …    Authorship Guidelines JGI will provide all users with a list of JGI staff who contributed to their project, …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … that deepen our understanding of how organisms interact with each other and with their environment and help unravel …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture …
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Microbial Program
… Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … management. The program aims to generate high-quality genomic datasets, particularly for uncultivated …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … insights into microbial diversity and metabolic potential, with implications for energy production, environmental …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …
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Metabolomics Program
… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … This program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function … and sampled.  Combining collected metabolomics data with genomics, transcriptomics, imaging, and other data from …
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Industry Engagement Program
… the public sector: academic and government institutions — with capabilities that had remained largely unknown and … ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … to support AI applications. In an effort to lead AI-driven genomic innovation to advance biotechnology, the JGI …
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Natural Prodcast Episode 11: Marnix Medema
… pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen University in the … center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …
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